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1

Deep Learning in Microscopy Image Analysis: A Survey

Xing, Fuyong, Xie, Yuanpu, Su, Hai, Liu, Fujun, Yang, Lin

Journal:

IEEE Transactions on Neural Networks and Learning Systems

Year:

2017

Language:

english

File:

PDF, 2.96 MB

english, 2017

2

Pathologist-level interpretable whole-slide cancer diagnosis with deep learning

Zhang, Zizhao, Chen, Pingjun, McGough, Mason, Xing, Fuyong, Wang, Chunbao, Bui, Marilyn, Xie, Yuanpu, Sapkota, Manish, Cui, Lei, Dhillon, Jasreman, Ahmad, Nazeel, Khalil, Farah K., Dickinson, Shohreh

Journal:

Nature Machine Intelligence

Year:

2019

Language:

english

File:

PDF, 3.71 MB

english, 2019

3

Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review

Xing, Fuyong, Yang, Lin

Journal:

IEEE Reviews in Biomedical Engineering

Year:

2016

Language:

english

File:

PDF, 17.61 MB

english, 2016

4

A comprehensive error compensation strategy for machining process with general fixture layouts

Yang, Fuyong, Xing, Yanfeng, Li, Xuexing

Journal:

The International Journal of Advanced Manufacturing Technology

Year:

2020

File:

PDF, 750 KB

2020

5

Corrigendum to arbuscular mycorrhizal fungi increase the bioavailability and wheat (triticum aestivum L.) Uptake of selenium in soil industrial crops and products

Li, Jiao, Awasthi, Mukesh Kumar, Xing, Wenjing, Liu, Ruifang, Bao, Huanyu, Wang, Xin, Wang, Jinfeng, Wu, Fuyong

Journal:

Industrial Crops and Products

Year:

2020

File:

PDF, 561 KB

2020

6

Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set

Xin Qi, Fuyong Xing, Foran, D.J., Lin Yang

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2012

Language:

english

File:

PDF, 1.68 MB

english, 2012

7

Automatic Ki-67 Counting Using Robust Cell Detection and Online Dictionary Learning

Fuyong Xing,, Hai Su,, Neltner, Janna, Lin Yang,

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2014

Language:

english

File:

PDF, 2.90 MB

english, 2014

8

[IEEE 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) - Brooklyn, NY, USA (2015.4.16-2015.4.19)] 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) - Region segmentation in histopathological breast cancer images using deep convolutional neural network

Su, Hai, Liu, Fujun, Xie, Yuanpu, Xing, Fuyong, Meyyappan, Sreenivasan, Yang, Lin

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

9

Self-Learning for Face Clustering

Shi, Xiaoshuang, Guo, Zhenhua, Xing, Fuyong, Cai, Jinzheng, Yang, Lin

Journal:

Pattern Recognition

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

10

[IEEE 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - Honolulu, HI (2017.7.21-2017.7.26)] 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - MDNet: A Semantically and Visually Interpretable Medical Image Diagnosis Network

Zhang, Zizhao, Xie, Yuanpu, Xing, Fuyong, McGough, Mason, Yang, Lin

Year:

2017

Language:

english

File:

PDF, 445 KB

english, 2017

11

Assessment of a Machine Learning Model Applied to Harmonized Electronic Health Record Data for the Prediction of Incident Atrial Fibrillation

Tiwari, Premanand, Colborn, Kathryn L., Smith, Derek E., Xing, Fuyong, Ghosh, Debashis, Rosenberg, Michael A.

Journal:

JAMA Network Open

Year:

2020

Language:

english

File:

PDF, 890 KB

english, 2020

12

Anchor-Based Self-Ensembling for Semi-Supervised Deep Pairwise Hashing

Shi, Xiaoshuang, Guo, Zhenhua, Xing, Fuyong, Liang, Yun, Yang, Lin

Journal:

International Journal of Computer Vision

Year:

2020

Language:

english

File:

PDF, 1.31 MB

english, 2020

13

Arbuscular mycorrhizal fungi increase the bioavailability and wheat (Triticum aestivum L.) uptake of selenium in soil

Li, Jiao, Awasthi, Mukesh Kumar, Xing, Wenjing, Liu, Ruifang, Bao, Huanyu, Wang, Xin, Wang, Jinfeng, Wu, Fuyong

Journal:

Industrial Crops and Products

Year:

2020

File:

PDF, 1.77 MB

2020

14

Artificial Intelligence in Medicine || Artificial intelligence for pathology

Year:

2021

File:

PDF, 765 KB

2021

15

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Learning based automatic detection of myonuclei in isolated single skeletal muscle fibers using multi-focus image fusion

Su, Hai, Xing, Fuyong, Lee, Jonah D., Peterson, Charlotte A., Yang, Lin

Year:

2013

Language:

english

File:

PDF, 854 KB

english, 2013

16

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Robust cell segmentation for non-small cell lung cancer

Xing, Fuyong, Yang, Lin

Year:

2013

Language:

english

File:

PDF, 1.86 MB

english, 2013

17

[IEEE 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014) - Beijing, China (2014.4.29-2014.5.2)] 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) - Touching adipocyte cells decomposition using combinatorial optimization

Liu, Fujun, Xing, Fuyong, Su, Hai, Yang, Lin

Year:

2014

Language:

english

File:

PDF, 2.53 MB

english, 2014

18

Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation

Hai Su,, Fuyong Xing,, Lee, Jonah D., Peterson, Charlotte A., Lin Yang,

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.68 MB

english, 2014

19

[IEEE 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014) - Beijing, China (2014.4.29-2014.5.2)] 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) - Robust muscle cell segmentation using region selection with dynamic programming

Liu, Fujun, Xing, Fuyong, Yang, Lin

Year:

2014

Language:

english

File:

PDF, 2.99 MB

english, 2014

20

Novel image markers for non-small cell lung cancer classification and survival prediction

Wang, Hongyuan, Xing, Fuyong, Su, Hai, Stromberg, Arnold, Yang, Lin

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

21

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, Florida (Saturday 12 February 2011)] Medical Imaging 2011: Computer-Aided Diagnosis - Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging

Qi, Xin, Xing, Fuyong, Foran, David J., Yang, Lin, Summers, Ronald M., van Ginneken, Bram

Year:

2011

Language:

english

File:

PDF, 1.94 MB

english, 2011

22

Content-based histopathology image retrieval using CometCloud

Qi, Xin, Wang, Daihou, Rodero, Ivan, Diaz-Montes, Javier, Gensure, Rebekah H, Xing, Fuyong, Zhong, Hua, Goodell, Lauri, Parashar, Manish, Foran, David J, Yang, Lin

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 5.09 MB

english, 2014

23

The Effects of Xuefu Zhuyu and Shengmai on the Evolution of Syndromes and Inflammatory Markers in Patients with Unstable Angina Pectoris after Percutaneous Coronary Intervention: A Randomised Controlled Clinical Trial

Wang, Jie, Yang, Xiaochen, Chu, Fuyong, Chen, Jianxin, He, Qingyong, Yao, Kuiwu, Teng, Fei, Gao, Yonghong, Xing, Yanhui, Wu, Aiming, Xing, Yanwei

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2013

Language:

english

File:

PDF, 516 KB

english, 2013

24

[IEEE 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) - Brooklyn, NY, USA (2015.4.16-2015.4.19)] 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) - Automatic muscle perimysium annotation using deep convolutional neural network

Sapkota, Manish, Xing, Fuyong, Su, Hai, Yang, Lin

Year:

2015

Language:

english

File:

PDF, 2.87 MB

english, 2015

25

An Automatic Learning-based Framework for Robust Nucleus Segmentation

Xing, Fuyong, Xie, Yuanpu, Yang, Lin

Journal:

IEEE Transactions on Medical Imaging

Year:

2015

Language:

english

File:

PDF, 31.70 MB

english, 2015

26

[IEEE 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Milan (2015.8.25-2015.8.29)] 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Robust automatic breast cancer staging using a combination of functional genomics and image-omics

Hai Su,, Yong Shen,, Fuyong Xing,, Xin Qi,, Hirshfield, Kim M., Lin Yang,, Foran, David J.

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

27

[IEEE 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) - Brooklyn, NY, USA (2015.4.16-2015.4.19)] 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) - Unsupervised shape prior modeling for cell segmentation in neuroendocrine tumor

Xing, Fuyong, Yang, Lin

Year:

2015

Language:

english

File:

PDF, 2.13 MB

english, 2015

28

Robust Cell Detection of Histopathological Brain Tumor Images Using Sparse Reconstruction and Adaptive Dictionary Selection

Su, Hai, Xing, Fuyong, Yang, Lin

Journal:

IEEE Transactions on Medical Imaging

Year:

2016

Language:

english

File:

PDF, 6.48 MB

english, 2016

29

High-throughput histopathological image analysis via robust cell segmentation and hashing

Zhang, Xiaofan, Xing, Fuyong, Su, Hai, Yang, Lin, Zhang, Shaoting

Journal:

Medical Image Analysis

Year:

2015

Language:

english

File:

PDF, 2.71 MB

english, 2015

30

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, USA (Saturday 4 February 2012)] Medical Imaging 2012: Image Processing - Digitized tissue microarray classification using sparse reconstruction

Xing, Fuyong, Liu, Baiyang, Qi, Xin, Foran, David J., Yang, Lin, Haynor, David R., Ourselin, Sébastien

Year:

2012

Language:

english

File:

PDF, 3.41 MB

english, 2012

31

[IEEE 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - Las Vegas, NV, USA (2016.6.27-2016.6.30)] 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - SemiContour: A Semi-Supervised Learning Approach for Contour Detection

Zhang, Zizhao, Xing, Fuyong, Shi, Xiaoshuang, Yang, Lin

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

32

AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle

Sapkota, Manish, Liu, Fujun, Xie, Yuanpu, Su, Hai, Xing, Fuyong, Yang, Lin

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2017

Language:

english

File:

PDF, 17.97 MB

english, 2017

33

Efficient and Robust Cell Detection: A Structured Regression Approach

Xie, Yuanpu, Xing, Fuyong, Shi, Xiaoshuang, Kong, Xiangfei, Su, Hai, Yang, Lin

Journal:

Medical Image Analysis

Year:

2017

Language:

english

File:

PDF, 5.77 MB

english, 2017

34

Supervised graph hashing for histopathology image retrieval and classification

Shi, Xiaoshuang, Xing, Fuyong, Xu, KaiDi, Xie, Yuanpu, Su, Hai, Yang, Lin

Journal:

Medical Image Analysis

Year:

2017

Language:

english

File:

PDF, 5.66 MB

english, 2017

35

Revisiting Graph Construction for Fast Image Segmentation

Zhang, Zizhao, Xing, Fuyong, Wang, Hanzi, Yan, Yan, Huang, Ying, Shi, Xiaoshuang, Yang, Lin

Journal:

Pattern Recognition

Year:

2018

Language:

english

File:

PDF, 7.94 MB

english, 2018

36

Pairwise based Deep Ranking Hashing For Histopathology Image Classification and Retrieval

Shi, Xiaoshuang, Sapkota, Manish, Xing, Fuyong, Liu, Fujun, Cui, Lei, Yang, Lin

Journal:

Pattern Recognition

Year:

2018

Language:

english

File:

PDF, 856 KB

english, 2018

37

Texture Analysis for Muscular Dystrophy Classification in MRI with Improved Class Activation Mapping

Cai, Jinzheng, Xing, Fuyong, Batra, Abhinandan, Liu, Fujun, Walter, Glenn A., Vandenborne, Krista, Yang, Lin

Journal:

Pattern Recognition

Year:

2018

Language:

english

File:

PDF, 7.23 MB

english, 2018

38

A novel deep learning method for extracting unspecific biomedical relation

Bai, Tian, Wang, Chunyu, Wang, Ye, Huang, Lan, Xing, Fuyong

Journal:

Concurrency and Computation: Practice and Experience

Year:

2018

Language:

english

File:

PDF, 964 KB

english, 2018

39

Structured Orthogonal Matching Pursuit for Feature Selection

Shi, Xiaoshuang, Xing, Fuyong, Guo, Zhenhua, Su, Hai, Liu, Fujun, Yang, Lin

Journal:

Year:

2018

File:

PDF, 1.92 MB

2018

40

Structured Orthogonal Matching Pursuit for Feature Selection

Shi, Xiaoshuang, Xing, Fuyong, Guo, Zhenhua, Su, Hai, Liu, Fujun, Yang, Lin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.92 MB

english, 2018

41

Pixel-to-pixel Learning with Weak Supervision for Single-stage Nucleus Recognition in Ki67 Images

Xing, Fuyong, Cornish, Toby C., Bennett, Tell, Ghosh, Debashis, Yang, Lin

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2019

Language:

english

File:

PDF, 6 KB

english, 2019

42

Kernel machine tests of association between brain networks and phenotypes

Jensen, Alexandria M., Tregellas, Jason R., Sutton, Brianne, Xing, Fuyong, Ghosh, Debashis, Hu, Xiao

Journal:

Year:

2019

File:

PDF, 2.81 MB

2019

43

Kernel machine tests of association between brain networks and phenotypes

Jensen, Alexandria M., Tregellas, Jason R., Sutton, Brianne, Xing, Fuyong, Ghosh, Debashis, Hu, Xiao

Journal:

Year:

2019

Language:

english

File:

PDF, 2.81 MB

english, 2019

44

Impact of pine leaf biochar amendment on bacterial dynamics and correlation of environmental factors during pig manure composting

Li, Jiao, Xing, Wenjing, Bao, Huanyu, Wang, Jinfeng, Tong, Xiaogang, Zhang, He, Luo, Wanqing, Wu, Fuyong

Journal:

Bioresource Technology

Year:

2019

Language:

english

File:

PDF, 893 KB

english, 2019

45

Publisher Correction: Pathologist-level interpretable whole-slide cancer diagnosis with deep learning

Zhang, Zizhao, Chen, Pingjun, McGough, Mason, Xing, Fuyong, Wang, Chunbao, Bui, Marilyn, Xie, Yuanpu, Sapkota, Manish, Cui, Lei, Dhillon, Jasreman, Ahmad, Nazeel, Khalil, Farah K., Dickinson, Shohreh

Journal:

Nature Machine Intelligence

Year:

2019

File:

PDF, 504 KB

2019

46

Towards pixel-to-pixel deep nucleus detection in microscopy images

Xing, Fuyong, Xie, Yuanpu, Shi, Xiaoshuang, Chen, Pingjun, Zhang, Zizhao, Yang, Lin

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 3.52 MB

english, 2019

47

Succession of fungal dynamics and their influence on physicochemical parameters during pig manure composting employing with pine leaf biochar

Li, Jiao, Bao, Huanyu, Xing, Wenjing, Yang, Jing, Liu, Ruifang, Wang, Xin, Lv, Lihui, Tong, Xiaogang, Wu, Fuyong

Journal:

Bioresource Technology

Year:

2019

Language:

english

File:

PDF, 644 KB

english, 2019

48

Graph temporal ensembling based semi-supervised convolutional neural network with noisy labels for histopathology image analysis

Shi, Xiaoshuang, Su, Hai, Xing, Fuyong, Liang, Yun, Qu, Gang, Yang, Lin

Journal:

Medical Image Analysis

Year:

2020

File:

PDF, 9.62 MB

2020

49

Quantifying the incremental value of deep learning: Application to lung nodule detection

Warsavage, Theodore, Xing, Fuyong, BarÃ³n, Anna E., Feser, William J., Hirsch, Erin, Miller, York E., Malkoski, Stephen, Wolf, Holly J., Wilson, David O., Ghosh, Debashis, Bagci, Ulas

Journal:

Year:

2020

File:

PDF, 1.12 MB

2020

50

Organic ultraviolet-absorbing materials in street dust from Hefei, China: Concentrations, profiles, and human health risks

Xing, Xiangyang, Han, Xue, He, Lei, Cheng, Jiali, Zhong, Fuyong, Sun, Jiazheng, Tang, Zhenwu

Journal:

Process Safety and Environmental Protection

Year:

2020

File:

PDF, 1.43 MB

2020